Glyma18g49680 - SoyBase

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Report for Sequence Feature Glyma18g49680

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59047074
stop:	59053467
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29060	AT	Annotation by Michelle Graham. TAIR10: EXS (ERD1/XPR1/SYG1) family protein \| chr3:11044990-11048465 REVERSE LENGTH=800	SoyBase	E_val: 0	ISS
GO:0006817	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transport	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG1162	KOG	Predicted small molecule transporter	JGI		ISS
PTHR10783	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR	JGI		ISS
PTHR10783:SF4	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR XPR1	JGI		ISS
PF03105	PFAM	SPX domain	JGI		ISS
PF03124	PFAM	EXS family	JGI		ISS
UniRef100_Q2HT55	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SPX, N-terminal; EXS, C-terminal n=1 Tax=Medicago truncatula RepID=Q2HT55_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9DF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9DF related cluster n=1 Tax=unknown RepID=UPI000233E9DF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49680

Paralog	Evidence	Comments
Glyma09g37000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g261900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49680

Limit To All Plant Sequences

>Glyma18g49680.2   sequence type=transcript   gene model=Glyma18g49680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACGCGCTCAGTAGTATATCTCTCCTAAAATCTTATTAGATTTCTTGTCAACTTTCCTTTTTTGTTTAATTTCTCAAGCTGTATATGCCCCCATTACGCGGAAACAATGCAAGATGTATTATTCTCCAACCTATATTCATTGCAGCTCAGAAATGATGTTTCTCTAAGCTTCATTAAAAATTGAAATCTATAACTCTTTATTCTTTTTGGCTGAAGCACAAGTGTCTCACTCGAAAAAAAGAAAATATGAAGTTTGGGAAAGAATTTGTCTCACAAATGGTGCCAGAATGGGAAGAAGCATACATGGATTACAACTCTCTCAAAGCCACTCTGAAAAACATGTCAAAGTTTAGAGAGCTAAACGAGTCAGCACCAATGGCATCCACACCAAAAGGGTCTCTGAAGAGAAGGTTAACACTCTATAGAGCCTTTAGTGGTCTTACTGATAGACAAAGAGGGTCTCCTAGGAAGGGTGAGGATGAAGTTATACTTGTTCGTGCTGAGGAGGGTGAAGGCTCAGAAGGGTTGTATCAGACCATGTTCCTCAAGCCTTCTGAAGAAGGGGCAGAACAAGATCTTGTGTTTTTCAAGAAACTTGATCATGAGTTTAATAAGGTGAATAGCTTCTACAAGAAAATGGTGAATGGAATGGTTGAGGAGGCAGAGGAGTTGAGTAAGCAAATGAATGCTCTGATTGCTCTTAGAATAAAGGTGGACAATGTGGGGTTCAGAAATCTTGGTAGCAATGGGATCTCAACTTCATTTTCCATGAATCATGATATAAATGATGCAAAAACTGGTCTCTCACGTGTGCACATGGATGTGATTCATGAAGTTGAGATGAGCAATGGAACGCATTTGGAAAATGGAAGTGGAAATTATGAGGAACAAACCACTTCTAAGACTTCTGTTGGGGCCTTTAGACCTGCTTCATTGGAGACCCTTGATCACGTGAAGATCAACATGACCACACCAGAAACTCCTTTGTCAACCATAAAAGGGCTTCTCTCAAGTTCAAAATCTGACCAGTCATTTAGCAAGAAAGAGCTCAGGAAAGCTGAGGAACAAATAAGCATAGCCTTAAAGGAATTCTATAATAAGCTTCGGCTTCTAAAAAGCTATAGCTTCTTAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTATGACAAGGTTAGTTCAAGGAATGCATCAAAGGATTACTTAAAGATGGTGGACAGTTCATATGTTGGAAGCTCAGATGAGGTCAATAGGCTCATGGAAAGGGTGGAACATGCCTTCATTAAGCACTTTGCAAATGGGAATCACAGAAAGGGAATGAACACATTGAGACCAACTGCTAAGAAGGAGCGGCATAGAATTACATTCTTATTGGGACTGTTTACTGGCTGCTCAATTGCCCTCATTGTGGCACTGATTATACTAATACATGCAAGAAATATTCTATATAGCGAGGGTCGTACTAGATATATGGACAACATATTTCCTCTTTACAGTCTCTTTGGATACATAGTCTTGCATATGATCATTTACTCTGCAAATATATACCTATGGAGGCGTTATAAAATCAACTTCCCCTTTATATTTGGCTTCAAGGAAGGAACAGAATTGGGATACAGAGAAGTCTTTCTTCTTAGCTCAGGCCTCGCAGTACTCTCATTGGCTGCTGTCCTCTCAAACTTGGATATGGAGATGGACCAGAGAACAAAAAGTTTTTCAGCATTGACAGAATTAGTCCCTTTATGCCTTGTCATTGTTCTGCTGCTCATAACATTTTGTCCCTTCAACATCATATATAAATCCAGCCGCTTCTTCCTTATTCAGTGTGCATTTCATTGTGTTTGTGCTCCTCTTTACAAGGTCAATTTCCCAGAAAATTTCTTGGCAGACCAGCTTACCAGCCAGGTGCAGGCCTTTAGAAGTTTGGAATTCTATGTTTGCTACTATTTCTGGGGAAACTTCAAGACCAGATCAAACAACTGCCTCAAAAGTGATGTCTACAAAGCATTTTACTTAATTGTAGCTATTATTCCATTCTGGATCCGTTGTCTTCAGTGCTTTCGACGCTTGCTTGAAGAAAGAAATACAATGCATGGGCTCAATGGGCTAAAATACATCTCAACAGTAGTAGCACTTGTCTTGAGGACTACCAATGAGTTCCAAAGAGGAATGGTTTGGAAAATTCTAGCTGCAACTTCTTCAGGCATTGCAACGATTGTTAATACATATTGGGATATTGTCATAGATTGGGGTTTGCTGAGAAGGAATTCAAGAAATCCATGGTTGAGAGAAAAACTCTCTGTACCAAACAAAAATGTATATTTTGTTGCTATGGTGTTGAATGTTATACTGCGACTTGCATGGATGCAATCTGTTTTAGGCATTAGGGAAACTCCTATCCTGCATAGAACAGCTTTGACTGCTCTAGTAACTTGCTTGGAGATCCTTCGCCGTGGCATATGGAATTTTTTCAGGTTGGAGAATGAGCACTTGAACAATGTCGGCAACTATCGAGCATTCAAATCAGTACCCCTGCCTTTTAATTACGAAGATGAGGAAGAGAATACAGTCATATAAACATATGTGGGAATGAGGAGGAGGGAGCCATGAAAATACTAAAAGGTGACGAAAAGCAGGAAACTAAAATGAAGATAGCAAGATTGGCTTAAACAGAGTAATAGGGGAAGAGGGGTTCTACCCTTGTTATTCATATTGATTTCAATGTAATTTTTCCTATCTTTATGAGATAAGTTACTTGGCTGACTTGTCGTATATGTAAAGGAAACAAAGTCATATGTAAGGGTCTAACAAATGCTGGATTATTAATTTATGTGTGGATTAACATTATTTAATTTAAAATGATTTTTGAATTATTAAATATATTAATTAAAATCAGATCTCAATCACAACTTATGC

Coding sequences of Glyma18g49680

Limit To All Plant Sequences

>Glyma18g49680.1   sequence type=CDS   gene model=Glyma18g49680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTGGGAAAGAATTTGTCTCACAAATGGTGCCAGAATGGGAAGAAGCATACATGGATTACAACTCTCTCAAAGCCACTCTGAAAAACATGTCAAAGTTTAGAGAGCTAAACGAGTCAGCACCAATGGCATCCACACCAAAAGGGTCTCTGAAGAGAAGGTTAACACTCTATAGAGCCTTTAGTGGTCTTACTGATAGACAAAGAGGGTCTCCTAGGAAGGGTGAGGATGAAGTTATACTTGTTCGTGCTGAGGAGGGTGAAGGCTCAGAAGGGTTGTATCAGACCATGTTCCTCAAGCCTTCTGAAGAAGGGGCAGAACAAGATCTTGTGTTTTTCAAGAAACTTGATCATGAGTTTAATAAGGTGAATAGCTTCTACAAGAAAATGGTGAATGGAATGGTTGAGGAGGCAGAGGAGTTGAGTAAGCAAATGAATGCTCTGATTGCTCTTAGAATAAAGGTGGACAATGTGGGGTTCAGAAATCTTGGTAGCAATGGGATCTCAACTTCATTTTCCATGAATCATGATATAAATGATGCAAAAACTGGTCTCTCACGTGTGCACATGGATGTGATTCATGAAGTTGAGATGAGCAATGGAACGCATTTGGAAAATGGAAGTGGAAATTATGAGGAACAAACCACTTCTAAGACTTCTGTTGGGGCCTTTAGACCTGCTTCATTGGAGACCCTTGATCACGTGAAGATCAACATGACCACACCAGAAACTCCTTTGTCAACCATAAAAGGGCTTCTCTCAAGTTCAAAATCTGACCAGTCATTTAGCAAGAAAGAGCTCAGGAAAGCTGAGGAACAAATAAGCATAGCCTTAAAGGAATTCTATAATAAGCTTCGGCTTCTAAAAAGCTATAGCTTCTTAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTATGACAAGGTTAGTTCAAGGAATGCATCAAAGGATTACTTAAAGATGGTGGACAGTTCATATGTTGGAAGCTCAGATGAGGTCAATAGGCTCATGGAAAGGGTGGAACATGCCTTCATTAAGCACTTTGCAAATGGGAATCACAGAAAGGGAATGAACACATTGAGACCAACTGCTAAGAAGGAGCGGCATAGAATTACATTCTTATTGGGACTGTTTACTGGCTGCTCAATTGCCCTCATTGTGGCACTGATTATACTAATACATGCAAGAAATATTCTATATAGCGAGGGTCGTACTAGATATATGGACAACATATTTCCTCTTTACAGTCTCTTTGGATACATAGTCTTGCATATGATCATTTACTCTGCAAATATATACCTATGGAGGCGTTATAAAATCAACTTCCCCTTTATATTTGGCTTCAAGGAAGGAACAGAATTGGGATACAGAGAAGTCTTTCTTCTTAGCTCAGGCCTCGCAGTACTCTCATTGGCTGCTGTCCTCTCAAACTTGGATATGGAGATGGACCAGAGAACAAAAAGTTTTTCAGCATTGACAGAATTAGTCCCTTTATGCCTTGTCATTGTTCTGCTGCTCATAACATTTTGTCCCTTCAACATCATATATAAATCCAGCCGCTTCTTCCTTATTCAGTGTGCATTTCATTGTGTTTGTGCTCCTCTTTACAAGGTCAATTTCCCAGAAAATTTCTTGGCAGACCAGCTTACCAGCCAGGTGCAGGCCTTTAGAAGTTTGGAATTCTATGTTTGCTACTATTTCTGGGGAAACTTCAAGACCAGATCAAACAACTGCCTCAAAAGTGATGTCTACAAAGCATTTTACTTAATTGTAGCTATTATTCCATTCTGGATCCGTTGTCTTCAGTGCTTTCGACGCTTGCTTGAAGAAAGAAATACAATGCATGGGCTCAATGGGCTAAAATACATCTCAACAGTAGTAGCACTTGTCTTGAGGACTACCAATGAGTTCCAAAGAGGAATGGTTTGGAAAATTCTAGCTGCAACTTCTTCAGGCATTGCAACGATTGTTAATACATATTGGGATATTGTCATAGATTGGGGTTTGCTGAGAAGGAATTCAAGAAATCCATGGTTGAGAGAAAAACTCTCTGTACCAAACAAAAATGTATATTTTGTTGCTATGGTGTTGAATGTTATACTGCGACTTGCATGGATGCAATCTGTTTTAGGCATTAGGGAAACTCCTATCCTGCATAGAACAGCTTTGACTGCTCTAGTAACTTGCTTGGAGATCCTTCGCCGTGGCATATGGAATTTTTTCAGGTTGGAGAATGAGCACTTGAACAATGTCGGCAACTATCGAGCATTCAAATCAGTACCCCTGCCTTTTAATTACGAAGATGAGGAAGAGAATACAGTCATATAA

>Glyma18g49680.2   sequence type=CDS   gene model=Glyma18g49680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTGGGAAAGAATTTGTCTCACAAATGGTGCCAGAATGGGAAGAAGCATACATGGATTACAACTCTCTCAAAGCCACTCTGAAAAACATGTCAAAGTTTAGAGAGCTAAACGAGTCAGCACCAATGGCATCCACACCAAAAGGGTCTCTGAAGAGAAGGTTAACACTCTATAGAGCCTTTAGTGGTCTTACTGATAGACAAAGAGGGTCTCCTAGGAAGGGTGAGGATGAAGTTATACTTGTTCGTGCTGAGGAGGGTGAAGGCTCAGAAGGGTTGTATCAGACCATGTTCCTCAAGCCTTCTGAAGAAGGGGCAGAACAAGATCTTGTGTTTTTCAAGAAACTTGATCATGAGTTTAATAAGGTGAATAGCTTCTACAAGAAAATGGTGAATGGAATGGTTGAGGAGGCAGAGGAGTTGAGTAAGCAAATGAATGCTCTGATTGCTCTTAGAATAAAGGTGGACAATGTGGGGTTCAGAAATCTTGGTAGCAATGGGATCTCAACTTCATTTTCCATGAATCATGATATAAATGATGCAAAAACTGGTCTCTCACGTGTGCACATGGATGTGATTCATGAAGTTGAGATGAGCAATGGAACGCATTTGGAAAATGGAAGTGGAAATTATGAGGAACAAACCACTTCTAAGACTTCTGTTGGGGCCTTTAGACCTGCTTCATTGGAGACCCTTGATCACGTGAAGATCAACATGACCACACCAGAAACTCCTTTGTCAACCATAAAAGGGCTTCTCTCAAGTTCAAAATCTGACCAGTCATTTAGCAAGAAAGAGCTCAGGAAAGCTGAGGAACAAATAAGCATAGCCTTAAAGGAATTCTATAATAAGCTTCGGCTTCTAAAAAGCTATAGCTTCTTAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTATGACAAGGTTAGTTCAAGGAATGCATCAAAGGATTACTTAAAGATGGTGGACAGTTCATATGTTGGAAGCTCAGATGAGGTCAATAGGCTCATGGAAAGGGTGGAACATGCCTTCATTAAGCACTTTGCAAATGGGAATCACAGAAAGGGAATGAACACATTGAGACCAACTGCTAAGAAGGAGCGGCATAGAATTACATTCTTATTGGGACTGTTTACTGGCTGCTCAATTGCCCTCATTGTGGCACTGATTATACTAATACATGCAAGAAATATTCTATATAGCGAGGGTCGTACTAGATATATGGACAACATATTTCCTCTTTACAGTCTCTTTGGATACATAGTCTTGCATATGATCATTTACTCTGCAAATATATACCTATGGAGGCGTTATAAAATCAACTTCCCCTTTATATTTGGCTTCAAGGAAGGAACAGAATTGGGATACAGAGAAGTCTTTCTTCTTAGCTCAGGCCTCGCAGTACTCTCATTGGCTGCTGTCCTCTCAAACTTGGATATGGAGATGGACCAGAGAACAAAAAGTTTTTCAGCATTGACAGAATTAGTCCCTTTATGCCTTGTCATTGTTCTGCTGCTCATAACATTTTGTCCCTTCAACATCATATATAAATCCAGCCGCTTCTTCCTTATTCAGTGTGCATTTCATTGTGTTTGTGCTCCTCTTTACAAGGTCAATTTCCCAGAAAATTTCTTGGCAGACCAGCTTACCAGCCAGGTGCAGGCCTTTAGAAGTTTGGAATTCTATGTTTGCTACTATTTCTGGGGAAACTTCAAGACCAGATCAAACAACTGCCTCAAAAGTGATGTCTACAAAGCATTTTACTTAATTGTAGCTATTATTCCATTCTGGATCCGTTGTCTTCAGTGCTTTCGACGCTTGCTTGAAGAAAGAAATACAATGCATGGGCTCAATGGGCTAAAATACATCTCAACAGTAGTAGCACTTGTCTTGAGGACTACCAATGAGTTCCAAAGAGGAATGGTTTGGAAAATTCTAGCTGCAACTTCTTCAGGCATTGCAACGATTGTTAATACATATTGGGATATTGTCATAGATTGGGGTTTGCTGAGAAGGAATTCAAGAAATCCATGGTTGAGAGAAAAACTCTCTGTACCAAACAAAAATGTATATTTTGTTGCTATGGTGTTGAATGTTATACTGCGACTTGCATGGATGCAATCTGTTTTAGGCATTAGGGAAACTCCTATCCTGCATAGAACAGCTTTGACTGCTCTAGTAACTTGCTTGGAGATCCTTCGCCGTGGCATATGGAATTTTTTCAGGTTGGAGAATGAGCACTTGAACAATGTCGGCAACTATCGAGCATTCAAATCAGTACCCCTGCCTTTTAATTACGAAGATGAGGAAGAGAATACAGTCATATAA

Predicted protein sequences of Glyma18g49680

Limit To All Plant Sequences

>Glyma18g49680.1   sequence type=predicted peptide   gene model=Glyma18g49680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFGKEFVSQMVPEWEEAYMDYNSLKATLKNMSKFRELNESAPMASTPKGSLKRRLTLYRAFSGLTDRQRGSPRKGEDEVILVRAEEGEGSEGLYQTMFLKPSEEGAEQDLVFFKKLDHEFNKVNSFYKKMVNGMVEEAEELSKQMNALIALRIKVDNVGFRNLGSNGISTSFSMNHDINDAKTGLSRVHMDVIHEVEMSNGTHLENGSGNYEEQTTSKTSVGAFRPASLETLDHVKINMTTPETPLSTIKGLLSSSKSDQSFSKKELRKAEEQISIALKEFYNKLRLLKSYSFLNLLAFSKIMKKYDKVSSRNASKDYLKMVDSSYVGSSDEVNRLMERVEHAFIKHFANGNHRKGMNTLRPTAKKERHRITFLLGLFTGCSIALIVALIILIHARNILYSEGRTRYMDNIFPLYSLFGYIVLHMIIYSANIYLWRRYKINFPFIFGFKEGTELGYREVFLLSSGLAVLSLAAVLSNLDMEMDQRTKSFSALTELVPLCLVIVLLLITFCPFNIIYKSSRFFLIQCAFHCVCAPLYKVNFPENFLADQLTSQVQAFRSLEFYVCYYFWGNFKTRSNNCLKSDVYKAFYLIVAIIPFWIRCLQCFRRLLEERNTMHGLNGLKYISTVVALVLRTTNEFQRGMVWKILAATSSGIATIVNTYWDIVIDWGLLRRNSRNPWLREKLSVPNKNVYFVAMVLNVILRLAWMQSVLGIRETPILHRTALTALVTCLEILRRGIWNFFRLENEHLNNVGNYRAFKSVPLPFNYEDEEENTVI*

>Glyma18g49680.2   sequence type=predicted peptide   gene model=Glyma18g49680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFGKEFVSQMVPEWEEAYMDYNSLKATLKNMSKFRELNESAPMASTPKGSLKRRLTLYRAFSGLTDRQRGSPRKGEDEVILVRAEEGEGSEGLYQTMFLKPSEEGAEQDLVFFKKLDHEFNKVNSFYKKMVNGMVEEAEELSKQMNALIALRIKVDNVGFRNLGSNGISTSFSMNHDINDAKTGLSRVHMDVIHEVEMSNGTHLENGSGNYEEQTTSKTSVGAFRPASLETLDHVKINMTTPETPLSTIKGLLSSSKSDQSFSKKELRKAEEQISIALKEFYNKLRLLKSYSFLNLLAFSKIMKKYDKVSSRNASKDYLKMVDSSYVGSSDEVNRLMERVEHAFIKHFANGNHRKGMNTLRPTAKKERHRITFLLGLFTGCSIALIVALIILIHARNILYSEGRTRYMDNIFPLYSLFGYIVLHMIIYSANIYLWRRYKINFPFIFGFKEGTELGYREVFLLSSGLAVLSLAAVLSNLDMEMDQRTKSFSALTELVPLCLVIVLLLITFCPFNIIYKSSRFFLIQCAFHCVCAPLYKVNFPENFLADQLTSQVQAFRSLEFYVCYYFWGNFKTRSNNCLKSDVYKAFYLIVAIIPFWIRCLQCFRRLLEERNTMHGLNGLKYISTVVALVLRTTNEFQRGMVWKILAATSSGIATIVNTYWDIVIDWGLLRRNSRNPWLREKLSVPNKNVYFVAMVLNVILRLAWMQSVLGIRETPILHRTALTALVTCLEILRRGIWNFFRLENEHLNNVGNYRAFKSVPLPFNYEDEEENTVI*

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